PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.1B22D
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 263aa    MW: 29323.1 Da    PI: 9.1002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.1B22DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-0980122754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++Er  R+++N+++  Lr+++Pk +      K++ a+iL  A++Y+++L
  Araip.1B22D  80 MAERWHRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLREL 122
                  79*********************66......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-1570137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.57773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-1076124No hitNo description
SMARTSM003533.3E-1079128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-1280134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-780122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF086962.5E-5192259IPR014808DNA replication factor Dna2, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKPVIIKMFI SITMEIETEG SGDEMKNSSC SALDLYSKAV VVEENGNHSG GGNGNLSLSG  60
GVNGGDQKGK KKGMPVKNLM AERWHRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLR  120
ELLQWINDLY NELESTPPGP SLQSSTTSLQ PLTPTPQTLP CRVKEELYPG VLPSPKNQLA  180
KRLFAIIYHA EIVCLRRTVL DEKLKCKEYS TAALIGTLLY QNFQDGLIDF LKTIHLLISL  240
KVTQKWQLLR NIESLYACGG VNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LSE25e-52ICE1_ARATH; Transcription factor ICE1
TrEMBLI7EMG74e-56I7EMG7_CAMSI; ICE1
STRINGPOPTR_0012s10780.17e-54(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-36bHLH family protein